6V14
Crystal structure of the bromodomain of human BRD9 bound to TP472
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-04-13 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 |
Unit cell lengths | 23.270, 33.860, 37.680 |
Unit cell angles | 104.10, 102.10, 105.91 |
Refinement procedure
Resolution | 34.904 - 1.700 |
R-factor | 0.1459 |
Rwork | 0.145 |
R-free | 0.17090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | PDBID 3HME |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14-3260_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.904 | 34.904 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.021 | 0.018 | 0.072 |
Rmeas | 0.026 | 0.022 | 0.101 |
Total number of observations | 28801 | ||
Number of reflections | 11091 | 115 | 741 |
<I/σ(I)> | 30.91 | 59.29 | 8.12 |
Completeness [%] | 98.1 | 90.6 | 92.5 |
Redundancy | 2.597 | 3.435 | 1.644 |
CC(1/2) | 0.999 | 0.999 | 0.985 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M NaCl, 0.1 M Bis-Tris (pH 5.5), and 25% PEG 3350 |