6TA2
Human NAMPT in complex with nicotinic acid mononucleotide and phosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-08 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.976 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.795, 106.711, 83.093 |
Unit cell angles | 90.00, 96.72, 90.00 |
Refinement procedure
Resolution | 82.520 - 1.680 |
R-factor | 0.1866 |
Rwork | 0.185 |
R-free | 0.22090 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dhd |
RMSD bond length | 0.010 |
RMSD bond angle | 1.040 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 100.000 | 1.710 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.104 | 1.184 |
Rmeas | 0.140 | 1.570 |
Rpim | 0.092 | 1.023 |
Number of reflections | 119105 | 5854 |
<I/σ(I)> | 7.5 | 1.2 |
Completeness [%] | 99.5 | 99.5 |
Redundancy | 3.8 | 3.8 |
CC(1/2) | 0.996 | 0.529 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 281 | 100 mM Bis Tris propane, 20 mM sodium potassium phosphate, 22% PEG3350, 10 mM NAMN |