6T7F
RCR E3 ligase E2-Ubiquitin transthiolation intermediate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.2737 |
Spacegroup name | H 3 2 |
Unit cell lengths | 179.008, 179.008, 87.276 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.690 - 2.580 |
R-factor | 0.1983 |
Rwork | 0.195 |
R-free | 0.25610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o6c 5egg 1ubq |
RMSD bond length | 0.007 |
RMSD bond angle | 1.514 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.690 | 2.690 |
High resolution limit [Å] | 2.580 | 2.580 |
Rmerge | 0.103 | |
Rmeas | 0.106 | |
Rpim | 0.025 | |
Number of reflections | 16676 | 1868 |
<I/σ(I)> | 20.7 | 0.9 |
Completeness [%] | 98.4 | 91.4 |
Redundancy | 17.6 | 9.1 |
CC(1/2) | 0.999 | 0.434 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 292 | 0.85 M sodium citrate, 100 mM sodium chloride, 100 mM Tris-HCl pH 8.0 |