6SGE
Crystal structure of Human RHOB-GTP in complex with nanobody B6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-12-19 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.965 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 66.840, 70.227, 71.212 |
Unit cell angles | 90.00, 107.68, 90.00 |
Refinement procedure
Resolution | 47.175 - 1.500 |
R-factor | 0.1615 |
Rwork | 0.161 |
R-free | 0.18840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2fv8 |
Data reduction software | XDS (3.20) |
Data scaling software | XDS (3.20) |
Phasing software | PHENIX (1.16-3549) |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.795 | 48.795 | 1.380 |
High resolution limit [Å] | 1.300 | 3.900 | 1.300 |
Rmerge | 0.029 | 0.019 | 1.045 |
Rmeas | 0.035 | 0.024 | 1.459 |
Total number of observations | 311846 | ||
Number of reflections | 110991 | 5722 | 3042 |
<I/σ(I)> | 17.39 | 55.2 | 0.61 |
Completeness [%] | 72.5 | 97.2 | 12.3 |
Redundancy | 2.81 | 3.059 | 1.449 |
CC(1/2) | 0.999 | 0.999 | 0.451 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 285 | 100 mM Mes pH 6.5 200 mM MgCl2 25% v/w PEG 4000 |