6RYF
High-resolution crystal structure of ERAP1 in complex with 15mer phosphinic peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-24 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 57.693, 117.157, 146.598 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.520 - 1.720 |
R-factor | 0.1768 |
Rwork | 0.176 |
R-free | 0.20130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2yd0 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.874 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.520 | 1.750 |
High resolution limit [Å] | 1.720 | 1.720 |
Number of reflections | 106245 | 5264 |
<I/σ(I)> | 12.5 | |
Completeness [%] | 100.0 | 99.98 |
Redundancy | 8 | |
CC(1/2) | 0.999 | 0.368 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 100 mM propionic acid, cacodylate and Bis-tris propane pH 7.0, 25% PEG 1500 |