6QMR
Complement factor D in complex with the inhibitor (S)-2-(2-((3'-(1-amino-2-hydroxyethyl)-[1,1'-biphenyl]-3-yl)methoxy)phenyl)acetic acid
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-01-01 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.000 |
Spacegroup name | P 1 |
Unit cell lengths | 66.151, 66.613, 76.377 |
Unit cell angles | 83.69, 64.36, 74.65 |
Refinement procedure
Resolution | 49.230 - 2.000 |
R-factor | 0.2216 |
Rwork | 0.220 |
R-free | 0.25550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1dsu |
RMSD bond length | 0.016 |
RMSD bond angle | 1.904 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.900 | 1.630 |
High resolution limit [Å] | 1.540 | 1.540 |
Rmerge | 0.072 | 0.837 |
Rmeas | 0.102 | 1.180 |
Number of reflections | 142642 | 21044 |
<I/σ(I)> | 5.82 | 0.7 |
Completeness [%] | 84.5 | 77.2 |
Redundancy | 1.73 | 1.59 |
CC(1/2) | 0.996 | 0.381 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 30% PEG MME 2000, 0.1M sodium thiocyanate |