6P0P
Human beta-tryptase co-crystal structure with 5-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-2-(3'-{4-[3-(aminomethyl)phenyl]piperidine-1-carbonyl}-[1,1'-biphenyl]-3-yl)-2-hydroxy-2H-1,3,2-benzodioxaborol-2-uide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X29A |
Synchrotron site | NSLS |
Beamline | X29A |
Temperature [K] | 298 |
Detector technology | CCD |
Collection date | 2013-01-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.075 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 78.099, 78.099, 165.182 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.680 - 2.550 |
R-factor | 0.18379 |
Rwork | 0.180 |
R-free | 0.24889 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2zeb |
RMSD bond length | 0.013 |
RMSD bond angle | 1.889 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.640 |
High resolution limit [Å] | 2.550 | 2.550 |
Number of reflections | 19717 | 19717 |
<I/σ(I)> | 12.9 | 2.4 |
Completeness [%] | 100.0 | 100 |
Redundancy | 7.8 | 7.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 298 | 1.9 mg/mL protein incubated with compound for 30 minutes on ice prior to setup with 30% PEG1500, 0.1 M sodium acetate, pH 4.6, 0.2 M ammonium sulfate |