6LI0
Crystal structure of GPR52 in complex with agonist c17
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 59.970, 88.360, 156.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.890 - 2.200 |
R-factor | 0.19499 |
Rwork | 0.194 |
R-free | 0.21982 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Rosetta modelling |
RMSD bond length | 0.011 |
RMSD bond angle | 1.662 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.280 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.177 | 2.885 |
Rpim | 0.034 | 0.034 |
Number of reflections | 42939 | 4164 |
<I/σ(I)> | 18.3 | 0.98 |
Completeness [%] | 99.0 | 99.3 |
Redundancy | 26.5 | 17.5 |
CC(1/2) | 0.443 | 0.443 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 5 | 293 | 0.13-0.18 M sodium acetate, 0.1 M sodium citrate PH5.0, 32-35% PEG400 |