6K0Y
Study of the interactions of a novel monoclonal antibody, mAb059c, with the hPD-1 receptor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-06 |
Detector | DECTRIS PILATUS3 R CdTe 300K |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.952, 102.590, 137.723 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.900 - 1.700 |
R-factor | 0.17317 |
Rwork | 0.171 |
R-free | 0.21447 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ggs |
RMSD bond length | 0.004 |
RMSD bond angle | 1.246 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | AMoRE |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.900 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.166 | 1.061 |
Rmeas | 0.053 | 0.421 |
Number of reflections | 62244 | 2532 |
<I/σ(I)> | 30.2 | 4.7 |
Completeness [%] | 98.2 | 80.2 |
Redundancy | 10 | 7 |
CC(1/2) | 0.994 | 0.796 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 0.2M NaCl , 0.1M Tris pH 8, 14% PEG 4K |