6JOL
Crystal structure of PDGFRA in complex with imatinib by co-crystallization
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-04 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97852 |
Spacegroup name | P 6 |
Unit cell lengths | 135.335, 135.335, 34.959 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.299 - 1.900 |
R-factor | 0.2151 |
Rwork | 0.214 |
R-free | 0.23560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5k5x |
RMSD bond length | 0.014 |
RMSD bond angle | 1.376 |
Data reduction software | DENZO |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Number of reflections | 27973 | |
<I/σ(I)> | 18.58 | |
Completeness [%] | 87.9 | |
Redundancy | 4.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M Sodium citrate pH4.5, 20% PEG 4000 |