6I81
Crystal Structure of the second bromodomain of BRD2 in complex with RT56
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | I 41 2 2 |
Unit cell lengths | 127.297, 127.297, 40.594 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.330 - 1.740 |
R-factor | 0.1727 |
Rwork | 0.172 |
R-free | 0.19560 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3oni |
RMSD bond length | 0.015 |
RMSD bond angle | 1.978 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.5.7) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.333 | 29.333 | 1.830 |
High resolution limit [Å] | 1.740 | 5.500 | 1.740 |
Rmerge | 0.028 | 0.486 | |
Rmeas | 0.062 | 0.030 | 0.510 |
Rpim | 0.019 | 0.009 | 0.152 |
Total number of observations | 185563 | ||
Number of reflections | 17453 | 630 | 2499 |
<I/σ(I)> | 23.6 | 19.4 | 1.6 |
Completeness [%] | 100.0 | 99.4 | 99.9 |
Redundancy | 10.6 | 9.8 | 11.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 30% PEG1000 0.1M MMT pH 7.0 |