6I0M
Structure of human IMP dehydrogenase, isoform 2, bound to GDP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-07-10 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.99990 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 134.729, 134.729, 324.081 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 162.000 - 2.567 |
R-factor | 0.2203 |
Rwork | 0.219 |
R-free | 0.24870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4z87 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.657 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12rc1_2801: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 162.000 | 2.753 |
High resolution limit [Å] | 2.567 | 2.567 |
Rmerge | 0.194 | 2.617 |
Rmeas | 0.198 | 2.696 |
Rpim | 0.039 | 0.517 |
Number of reflections | 48045 | 517 |
<I/σ(I)> | 14.6 | 1.6 |
Completeness [%] | 94.9 | 64.2 |
Redundancy | 25.8 | 27.1 |
CC(1/2) | 0.997 | 0.629 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.1 M sodium citrate, pH 5.5 0.2 M lithium sulphate 15% (v/v) ethanol |