6HZN
Crystal structure of human dermatan sulfate epimerase 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-05-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97967 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 182.676, 213.914, 86.945 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.574 - 2.410 |
R-factor | 0.1772 |
Rwork | 0.176 |
R-free | 0.20890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | CRANK2 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.775 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.574 | 2.446 |
High resolution limit [Å] | 2.410 | 2.410 |
Rmerge | 0.092 | |
Rmeas | 0.097 | |
Rpim | 0.030 | |
Number of reflections | 66029 | |
<I/σ(I)> | 15.71 | |
Completeness [%] | 100.0 | |
Redundancy | 10.5 | |
CC(1/2) | 0.999 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.15 | Ammonium acetate 200 mM, MES 0.1 M (pH 6.5), Glycerol ethoxylate 30% v/v, Xylitol 6% |