6H0B
Crystal structure of the human GalNAc-T4 in complex with UDP, manganese and the diglycopeptide 6.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-12 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97 |
Spacegroup name | P 1 |
Unit cell lengths | 66.090, 81.332, 84.863 |
Unit cell angles | 65.55, 68.66, 74.31 |
Refinement procedure
Resolution | 73.990 - 1.800 |
R-factor | 0.19092 |
Rwork | 0.190 |
R-free | 0.23806 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nqa |
RMSD bond length | 0.014 |
RMSD bond angle | 1.823 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 73.990 | 1.900 |
High resolution limit [Å] | 1.800 | 1.800 |
Rpim | 0.044 | 0.742 |
Number of reflections | 133764 | |
<I/σ(I)> | 9.2 | 0.9 |
Completeness [%] | 97.3 | 95.6 |
Redundancy | 3.7 | 3.8 |
CC(1/2) | 0.998 | 0.529 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | PEG3350 ammonium nitrate |