6DFT
Trypanosoma brucei deoxyhypusine synthase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 64.358, 242.162, 266.303 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.752 - 3.500 |
R-factor | 0.224 |
Rwork | 0.222 |
R-free | 0.26230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rqd |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.560 |
High resolution limit [Å] | 3.500 | 9.480 | 3.500 |
Rmerge | 0.188 | 0.081 | 0.796 |
Rmeas | 0.214 | 0.092 | 0.924 |
Rpim | 0.101 | 0.042 | 0.455 |
Total number of observations | 214291 | ||
Number of reflections | 52848 | 2904 | 2556 |
<I/σ(I)> | 4.1 | ||
Completeness [%] | 97.2 | 97.6 | 94.4 |
Redundancy | 4.1 | 4.4 | 3.4 |
CC(1/2) | 0.984 | 0.650 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1 M HEPES, 10 mM TCEP, 2 mM NAD+, 8% PEG 6000, 20% ETHYLENE GLYCOL |