6DDY
Crystal structure of the double mutant (D52N/K359Q) of NT5C2-537X in the active state, Northeast Structural Genomics Target
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL14-1 |
Synchrotron site | SSRL |
Beamline | BL14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-06-15 |
Detector | MARRESEARCH |
Wavelength(s) | 0.979 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 91.480, 126.840, 130.188 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.425 - 1.803 |
R-factor | 0.1868 |
Rwork | 0.185 |
R-free | 0.20310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ddh |
RMSD bond length | 0.006 |
RMSD bond angle | 0.799 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | COMO |
Refinement software | PHENIX ((1.12_2829)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.425 | 1.860 |
High resolution limit [Å] | 1.803 | 1.803 |
Rmerge | 0.074 | 0.510 |
Number of reflections | 69294 | 6902 |
<I/σ(I)> | 44.1 | 2.7 |
Completeness [%] | 99.4 | 100 |
Redundancy | 13.3 | 13.5 |
CC(1/2) | 0.980 | 0.920 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 7.5 | 293 | 0.1 M HEPES (pH 7.5), 20% (w/v) PEG 1000, 0.1 M ammonium bromide, 5 mM ATP, 5 mM IMP, and 5 mM MgCl2 |