6DBC
Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-02-26 |
Detector | RAYONIX MX300-HS |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 52.394, 72.186, 31.975 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.723 - 1.050 |
R-factor | 0.1277 |
Rwork | 0.128 |
R-free | 0.13210 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ig6 |
RMSD bond length | 0.005 |
RMSD bond angle | 0.895 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.070 |
High resolution limit [Å] | 1.050 | 2.650 | 1.050 |
Rmerge | 0.084 | 0.063 | 0.630 |
Rmeas | 0.087 | 0.065 | 0.668 |
Rpim | 0.024 | 0.018 | 0.216 |
Number of reflections | 57487 | 3852 | 3482 |
<I/σ(I)> | 35.6 | ||
Completeness [%] | 99.8 | 99.5 | 97.9 |
Redundancy | 13.2 | 12.7 | 8.8 |
CC(1/2) | 0.997 | 0.864 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291.15 | PEG 3350, Potassium thicyanate |