6D06
Human ADAR2d E488Y mutant complexed with dsRNA containing an abasic site opposite the edited base
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 174.680, 63.440, 132.060 |
Unit cell angles | 90.00, 126.64, 90.00 |
Refinement procedure
Resolution | 105.960 - 2.550 |
R-factor | 0.19334 |
Rwork | 0.190 |
R-free | 0.25518 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1zy7 |
RMSD bond length | 0.012 |
RMSD bond angle | 1.739 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 106.000 | 2.620 |
High resolution limit [Å] | 2.550 | 2.550 |
Rmerge | 0.063 | 0.723 |
Number of reflections | 37329 | 2749 |
<I/σ(I)> | 15.27 | 2.07 |
Completeness [%] | 97.4 | 98.1 |
Redundancy | 3.44 | 3.5 |
CC(1/2) | 0.998 | 0.736 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 0.1 M MES:NaOH pH 6.5, 14% PEG 20,000 |