6CER
Human pyruvate dehydrogenase complex E1 component V138M mutation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-11-19 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 121.760, 123.919, 128.279 |
Unit cell angles | 90.00, 118.12, 90.00 |
Refinement procedure
Resolution | 35.686 - 2.690 |
R-factor | 0.1939 |
Rwork | 0.192 |
R-free | 0.23380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ni4 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.617 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.690 | 2.786 |
High resolution limit [Å] | 2.690 | 2.690 |
Rmerge | 0.114 | 0.684 |
Rmeas | 0.138 | 0.825 |
Rpim | 0.076 | 0.456 |
Number of reflections | 89293 | 9028 |
<I/σ(I)> | 8.43 | 1.6 |
Completeness [%] | 95.6 | 96.79 |
Redundancy | 2.8 | 2.7 |
CC(1/2) | 0.993 | 0.726 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | ammonium sulfate, PEG 3350, potassium phosphate, magnesium chloride, thiamin diphosphate |