6C4G
Plasmepsin V from Plasmodium vivax bound to a transition state mimetic (WEHI-601)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 61.541, 91.192, 176.038 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.996 - 2.390 |
R-factor | 0.1931 |
Rwork | 0.188 |
R-free | 0.23810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zl4 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.015 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.0) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.996 | 48.996 | 2.530 |
High resolution limit [Å] | 2.390 | 7.100 | 2.390 |
Rmerge | 0.164 | 0.049 | 1.656 |
Rmeas | 0.171 | 0.052 | 1.721 |
Number of reflections | 19919 | 844 | 3046 |
<I/σ(I)> | 12.98 | 41.55 | 1.44 |
Completeness [%] | 99.4 | 99.8 | 96.5 |
Redundancy | 13.301 | 11.853 | 13.41 |
CC(1/2) | 0.998 | 0.999 | 0.564 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 293 | 0.2 M ammonium sulfate, 25% w/v PEG3350, 0.1 M Bis-Tris chloride, pH 5.5 |