6C4G
Plasmepsin V from Plasmodium vivax bound to a transition state mimetic (WEHI-601)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Aspartic protease PM5 | polymer | 444 | 50582.4 | 1 | UniProt (Q6PRR9) Pfam (PF14543) Pfam (PF00026) UniProt (by SIFTS) (A5K302) In PDB | Plasmodium vivax (malaria parasite P. vivax) | Plasmepsin V |
| 2 | B | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 3 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 4 | A | benzyl [(6S,7S,10S,13S,18Z)-18-amino-10-cyclohexyl-6-hydroxy-18-imino-7-(2-methylpropyl)-4,9,12-trioxo-1-phenyl-16-oxa-3,8,11,17-tetraazaoctadecan-13-yl]carbamate | non-polymer | 709.9 | 1 | BIRD (PRD_002302) Chemie (EQG) | |||
| 5 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 2 | Chemie (EDO) | |||
| 6 | water | water | 18.0 | 27 | Chemie (HOH) |
Sequence modifications
A: 35 - 476 (UniProt: Q6PRR9)
| PDB | External Database | Details |
|---|---|---|
| Gly 33 | - | expression tag |
| Thr 34 | - | expression tag |
| Val 276 | Ile 276 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 50582.4 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1055.2 | |
| All* | Total formula weight | 52062.0 |
