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6VEL

Crystal Structure of Human E-cadherin bound by mouse monoclonal antibody 66E8Fab

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-F
Synchrotron siteAPS
Beamline21-ID-F
Temperature [K]100
Detector technologyCCD
Collection date2019-07-18
DetectorRAYONIX MX-300
Wavelength(s)0.97872
Spacegroup nameP 31 2 1
Unit cell lengths142.170, 142.170, 90.320
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution46.540 - 2.650
R-factor0.1961
Rwork0.194
R-free0.23580
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2o72
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2-3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.54046.5402.720
High resolution limit [Å]2.65011.8502.650
Rmerge0.0610.0230.595
Rmeas0.0650.0250.631
Total number of observations269932
Number of reflections309063832243
<I/σ(I)>24.6854.393.56
Completeness [%]99.996100
Redundancy8.7347.1548.984
CC(1/2)0.9990.9990.920
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.5290A complex of HosaA.19747.a.KW2, MumuA.20194.a.LG23, and MumuA.20195.a.LH23 was crystallized at 10.4 mg/ml at 14C and mixed 1:1 with 12.5% (w/v) PEG 4000, 20% (v/v) 1,2,6-hexanetriol, 0.1M GlyGly/AMPD pH 8.5, 0.03M of each Lithium sulfate, Sodium sulfate, and Potassium sulfate. Tray 307437a10: puck ckt8-9.

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PDB entries from 2024-05-15

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