6F6D
The catalytic domain of KDM6B in complex with H3(17-33)K18IA21M peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 77 |
Detector technology | PIXEL |
Collection date | 2017-07-05 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.072 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 68.480, 68.480, 230.000 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 57.500 - 1.818 |
R-factor | 0.166994950638 |
Rwork | 0.165 |
R-free | 0.21359 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5oy3 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.033 |
Data scaling software | autoPROC (1.1.7) |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 65.633 | 1.850 |
High resolution limit [Å] | 1.818 | 1.818 |
Rmerge | 0.125 | |
Rmeas | 0.131 | |
Rpim | 0.037 | |
Number of reflections | 49999 | 2490 |
<I/σ(I)> | 12.3 | 2.1 |
Completeness [%] | 99.2 | 100 |
Redundancy | 12.3 | 13.2 |
CC(1/2) | 0.998 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 277 | 0.1M TRIS pH 8.0, 15%(v/v) Tert-butanol, |