5ZLN
Crystal structure of mouse TLR9 in complex with two DNAs (CpG DNA and TCGCCA DNA)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-07-16 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 114.306, 128.141, 156.798 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.610 - 2.300 |
R-factor | 0.19369 |
Rwork | 0.191 |
R-free | 0.23847 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3wpf |
RMSD bond length | 0.012 |
RMSD bond angle | 1.594 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0218) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.610 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 102418 | |
<I/σ(I)> | 11.4 | |
Completeness [%] | 99.8 | |
Redundancy | 11.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20%(w/v) PEG4000, 0.15M Ammonium sulfate, 0.1M HEPES-NaOH pH7.0 |