5YOD
Crystal structure of zika virus NS3 protease in complex with a small molecule inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-06-23 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 59.366, 59.628, 215.278 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.070 - 1.900 |
R-factor | 0.2483 |
Rwork | 0.242 |
R-free | 0.26830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5h6v |
RMSD bond length | 0.010 |
RMSD bond angle | 1.050 |
Data reduction software | iMOSFLM |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.740 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.088 | 0.749 |
Rpim | 0.058 | 0.522 |
Number of reflections | 61049 | 3898 |
<I/σ(I)> | 9.9 | 2 |
Completeness [%] | 99.6 | 100 |
Redundancy | 6 | 5.7 |
CC(1/2) | 0.998 | 0.533 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.6 | 291.15 | 0.2M Ammonium sulfate, 0.1M Sodium acetate trihydrate pH 4.6, 25% PEG4000 |