5VK2
Structural basis for antibody-mediated neutralization of Lassa virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-16 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97969 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 152.697, 152.697, 456.738 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.602 - 3.201 |
R-factor | 0.1908 |
Rwork | 0.189 |
R-free | 0.23130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ine |
RMSD bond length | 0.003 |
RMSD bond angle | 0.615 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.600 | 3.300 |
High resolution limit [Å] | 3.200 | 3.200 |
Rpim | 0.845 | |
Number of reflections | 52823 | 4465 |
<I/σ(I)> | 16.17 | 1.1 |
Completeness [%] | 99.7 | 99.5 |
Redundancy | 12.9 | 12.6 |
CC(1/2) | 0.999 | 0.574 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 296 | 0.1M Tris pH 8, 15-18% PEG 3350 and 0.1M-0.3M magnesium acetate |