Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VK2

Structural basis for antibody-mediated neutralization of Lassa virus

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2016-07-16
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.97969
Spacegroup nameP 61 2 2
Unit cell lengths152.697, 152.697, 456.738
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.602 - 3.201
R-factor0.1908
Rwork0.189
R-free0.23130
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ine
RMSD bond length0.003
RMSD bond angle0.615
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHENIX
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.6003.300
High resolution limit [Å]3.2003.200
Rpim0.845
Number of reflections528234465
<I/σ(I)>16.171.1
Completeness [%]99.799.5
Redundancy12.912.6
CC(1/2)0.9990.574
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP82960.1M Tris pH 8, 15-18% PEG 3350 and 0.1M-0.3M magnesium acetate

237423

PDB entries from 2025-06-11

PDB statisticsPDBj update infoContact PDBjnumon