5V21
Crystal structure of human SETD2 SET-domain in complex with H3K36M peptide and SAM
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-003 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-06 |
Detector | RIGAKU SATURN 944 |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.493, 76.316, 77.179 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.528 - 2.415 |
R-factor | 0.2073 |
Rwork | 0.204 |
R-free | 0.26930 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4h12 |
RMSD bond length | 0.016 |
RMSD bond angle | 1.415 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.7_650) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.510 |
High resolution limit [Å] | 2.420 | 2.420 |
Rmerge | 0.100 | 0.476 |
Number of reflections | 13529 | 1280 |
<I/σ(I)> | 14.1 | 3.2 |
Completeness [%] | 98.1 | |
Redundancy | 5.2 | 5.3 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 0.1 M KSCN, 24% (v/v) PEG 2000 MME |