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5V21

Crystal structure of human SETD2 SET-domain in complex with H3K36M peptide and SAM

Functional Information from GO Data
ChainGOidnamespacecontents
A0005634cellular_componentnucleus
A0016279molecular_functionprotein-lysine N-methyltransferase activity
A0042054molecular_functionhistone methyltransferase activity
A0046975molecular_functionhistone H3K36 methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 1801
ChainResidue
ACYS1516
ACYS1529
ACYS1533
ACYS1539
AZN1802

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 1802
ChainResidue
AZN1801
ACYS1499
ACYS1501
ACYS1516
ACYS1520

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 1803
ChainResidue
ACYS1631
ACYS1678
ACYS1680
ACYS1685

site_idAC4
Number of Residues15
Detailsbinding site for residue SAM A 1804
ChainResidue
ALYS1560
AGLY1561
ATRP1562
AHIS1603
ATYR1604
ATYR1605
AARG1625
APHE1626
AASN1628
AHIS1629
ATYR1666
AGLN1676
ALYS1677
ACYS1678
APHE1679

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15983376, ECO:0000269|PubMed:16185088, ECO:0000269|PubMed:16267050, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:17194708
ChainResidueDetails
BMET36
ACYS1680
ACYS1685
ACYS1501
ACYS1516
ACYS1520
ACYS1529
ACYS1533
ACYS1539
ACYS1631
ACYS1678

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-methyllysine => ECO:0000269|PubMed:15983376
ChainResidueDetails
BLYS37
AHIS1603
AASN1628
AGLN1676
APHE1679

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphotyrosine => ECO:0000269|PubMed:19783980
ChainResidueDetails
BTYR41

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PDB entries from 2024-05-01

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