5UAU
Structure of human PYCR-1 complexed with proline
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 4.2.2 |
Synchrotron site | ALS |
Beamline | 4.2.2 |
Temperature [K] | 100 |
Detector technology | CMOS |
Collection date | 2015-10-18 |
Detector | RDI CMOS_8M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 165.130, 87.750, 117.130 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 64.626 - 1.900 |
R-factor | 0.1978 |
Rwork | 0.196 |
R-free | 0.22830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2izz |
RMSD bond length | 0.005 |
RMSD bond angle | 0.699 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.15) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 64.630 | 64.630 | 1.930 |
High resolution limit [Å] | 1.900 | 10.410 | 1.900 |
Rmerge | 0.105 | 0.041 | 0.899 |
Rmeas | 0.043 | 0.971 | |
Rpim | 0.013 | 0.366 | |
Total number of observations | 10769 | 45238 | |
Number of reflections | 133932 | ||
<I/σ(I)> | 10.6 | 62.3 | 1.5 |
Completeness [%] | 99.7 | 99.3 | 99.9 |
Redundancy | 7.4 | 11.4 | 6.9 |
CC(1/2) | 0.997 | 0.999 | 0.846 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 295 | 300 mM Na2SO4, 16-18% (w/v) polyethylene glycol (PEG) 3350, and 0.1 M HEPES at pH 7.5. The crystal was soaked in 1.8 M L-proline |