5U8Q
Structure of the ectodomain of the human Type 1 insulin-like growth factor receptor in complex with IGF-I
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-08-20 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 88.690, 197.660, 117.650 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 22.172 - 3.271 |
R-factor | 0.261887829198 |
Rwork | 0.260 |
R-free | 0.30318 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5u8r |
RMSD bond length | 0.002 |
RMSD bond angle | 0.520 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | phenix.refine (1.11.1-2575_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.460 |
High resolution limit [Å] | 3.270 | 3.270 |
Rmerge | 0.190 | 2.070 |
Number of reflections | 32228 | 4896 |
<I/σ(I)> | 9.1 | 0.9 |
Completeness [%] | 98.6 | 92.5 |
Redundancy | 7.2 | 6.7 |
CC(1/2) | 0.775 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 293 | 1.2 M ammonium sulfate, 0.1 M imidazole-malate pH 7.0. IGF-1 was included by soaking directly into the mother crystal. For full details see the primary citation. |