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5T8D

Engineered variant of I-OnuI meganuclease targeting the HIV integrase gene; harbors 47 point mutations relative to wild-type I-OnuI

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]108
Detector technologyPIXEL
Collection date2016-03-03
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)1.000
Spacegroup nameP 21 21 21
Unit cell lengths39.701, 75.007, 165.158
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.381 - 2.150
R-factor0.1847
Rwork0.182
R-free0.22810
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qqy
RMSD bond length0.007
RMSD bond angle0.996
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER (2.6.0)
Refinement softwarePHENIX (1.10.1_2155)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.230
High resolution limit [Å]2.1504.6302.150
Rmerge0.0930.0470.618
Rmeas0.0970.0490.649
Rpim0.0270.0140.193
Total number of observations351202
Number of reflections27792
<I/σ(I)>6.7
Completeness [%]99.910099.2
Redundancy12.61211
CC(1/2)0.9990.904
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72930.2 M Ammonium sulfate, 0.1 M HEPES pH 7.0, 22.5% w/v Polyethylene glycol 3,350

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PDB entries from 2024-07-17

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