5N48
Structure of Anticalin N9B in complex with extra-domain B of human oncofetal fibronectin
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-12-07 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.91741 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.456, 67.801, 76.806 |
Unit cell angles | 90.00, 90.06, 90.00 |
Refinement procedure
Resolution | 28.470 - 1.600 |
R-factor | 0.1707 |
Rwork | 0.169 |
R-free | 0.20780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4gh7 |
RMSD bond length | 0.019 |
RMSD bond angle | 1.918 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 28.470 | 28.470 | 1.700 |
High resolution limit [Å] | 1.600 | 10.000 | 1.600 |
Rmerge | 0.057 | 0.032 | 0.423 |
Rmeas | 0.065 | 0.037 | 0.485 |
Total number of observations | 296035 | ||
Number of reflections | 70827 | 302 | 11714 |
<I/σ(I)> | 14.85 | 31.99 | 3.33 |
Completeness [%] | 99.7 | 93.2 | 99.8 |
Redundancy | 4.18 | 3.894 | 4.172 |
CC(1/2) | 0.998 | 0.998 | 0.879 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 29 % (w/v) PEG4000, 0.1 M Na-malonate |