5N16
First Bromodomain (BD1) from Candida albicans Bdf1 bound to a dibenzothiazepinone (compound 1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-01-22 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.9650 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 75.435, 77.292, 102.593 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.740 - 1.760 |
R-factor | 0.1804 |
Rwork | 0.178 |
R-free | 0.21480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5n15 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.979 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 54.100 | 1.820 |
High resolution limit [Å] | 1.760 | 1.760 |
Rmerge | 0.070 | 0.626 |
Rpim | 0.037 | 0.324 |
Number of reflections | 59921 | 5873 |
<I/σ(I)> | 12.1 | 2.3 |
Completeness [%] | 99.5 | 99.3 |
Redundancy | 4.4 | 4.4 |
CC(1/2) | 0.998 | 0.759 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 277 | Crystals were obtained by mixing a solution of 20 mg/mL protein and 0.4 mM inhibitor with 0.1 M TRIS-HCl (pH 8.5), 23% (w/v) PEG MME 2000 and 10 mM NiCl2. |