5M2V
Structure of GluK1 ligand-binding domain (S1S2) in complex with (2S,4R)-4-(2-carboxyphenoxy)pyrrolidine-2-carboxylic acid at 3.18 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX II BEAMLINE I911-3 |
Synchrotron site | MAX II |
Beamline | I911-3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-11 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1.0000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 71.986, 71.986, 233.363 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.170 - 3.180 |
R-factor | 0.2214 |
Rwork | 0.219 |
R-free | 0.27140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vso |
RMSD bond length | 0.002 |
RMSD bond angle | 0.469 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER |
Refinement software | PHENIX (1.10_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.750 | 29.170 | 3.350 |
High resolution limit [Å] | 3.180 | 10.060 | 3.180 |
Rmerge | 0.069 | 0.406 | |
Number of reflections | 11055 | ||
<I/σ(I)> | 10.2 | 5.9 | 1.9 |
Completeness [%] | 99.8 | 94.2 | 100 |
Redundancy | 6.5 | 5.2 | 6.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 280 | 15.2% PEG4000, 0.3 M lithium sulfate, 0.1 M cacodylate buffer pH 6.5 |