5I42
Structure of HIV-1 Reverse Transcriptase in complex with a DNA aptamer, AZTTP, and CA(2+) ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS BEAMLINE X25 |
Synchrotron site | NSLS |
Beamline | X25 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-08-19 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.1 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 90.151, 132.192, 139.658 |
Unit cell angles | 90.00, 97.15, 90.00 |
Refinement procedure
Resolution | 48.449 - 3.300 |
R-factor | 0.2217 |
Rwork | 0.221 |
R-free | 0.24730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5d3g |
RMSD bond length | 0.006 |
RMSD bond angle | 0.628 |
Data reduction software | MOSFLM |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.360 |
High resolution limit [Å] | 3.300 | 8.940 | 3.300 |
Rmerge | 0.051 | 0.020 | 0.339 |
Rmeas | 0.058 | ||
Rpim | 0.028 | ||
Total number of observations | 170385 | ||
Number of reflections | 46338 | ||
<I/σ(I)> | 11.5 | ||
Completeness [%] | 94.5 | 99.4 | 64 |
Redundancy | 3.7 | 4 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 7% PEG 8000, 25 MM BISTRIS-PROPANE PH 6.8, 75 MM BISTRIS-PROPANE PH 7.4, 50 MM AMMONIUM SULFATE, 5% GLYCEROL, 5% SUCROSE |