5EUQ
Crystal structure of an engineered construct of phosphatidylinositol 4 kinase III beta with a potent and selective inhibitor in complex with GDP loaded Rab11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-09-12 |
Detector | RAYONIX MX300HE |
Wavelength(s) | 0.97 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.900, 103.490, 188.940 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.340 - 3.200 |
R-factor | 0.2359 |
Rwork | 0.233 |
R-free | 0.26600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4d0l |
RMSD bond length | 0.003 |
RMSD bond angle | 0.613 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine: 1.9_1692)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.340 | 48.900 | 3.310 |
High resolution limit [Å] | 3.200 | 9.050 | 3.200 |
Rmerge | 0.109 | 0.035 | 0.702 |
Number of reflections | 16316 | ||
<I/σ(I)> | 8.9 | 22.3 | 2.11 |
Completeness [%] | 98.6 | 96.5 | 99.44 |
Redundancy | 4.1 | 3.6 | 4 |
CC(1/2) | 0.993 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.6 | 290 | PEG-4000, sodium citrate, ammonium sulfate, glycerol |