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5E2L

3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis in complex with D-phenylalanine

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAUSTRALIAN SYNCHROTRON BEAMLINE MX1
Synchrotron siteAustralian Synchrotron
BeamlineMX1
Temperature [K]100
Detector technologyCCD
Collection date2012-09-26
DetectorADSC QUANTUM 210r
Wavelength(s)0.97948
Spacegroup nameP 32 2 1
Unit cell lengths203.989, 203.989, 66.904
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution49.000 - 2.500
R-factor0.1566
Rwork0.156
R-free0.17360
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3nv8
RMSD bond length0.007
RMSD bond angle1.105
Data reduction softwareXDS
Data scaling softwareAimless (0.1.27)
Phasing softwareMOLREP
Refinement softwareREFMAC (5.7.0029)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.00049.0002.570
High resolution limit [Å]2.50010.6102.500
Rmerge0.1900.0500.850
Rpim0.0590.0170.262
Total number of observations620384764651918
Number of reflections55365
<I/σ(I)>1228.83
Completeness [%]100.099100
Redundancy11.29.811.5
CC(1/2)0.9930.9990.770
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.52980.1 M TRIS-HCl, pH 7.5, 1.5M ammonium sulfate, 12% v/v glycerol. Crystals were soaked in the same solution with an additional 10% v/v glycerol and 2.5 mM D-phenylalanine

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PDB entries from 2024-07-17

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