5E2L
3-deoxy-D-arabino-heptulosonate 7-phosphate synthase from Mycobacterium tuberculosis in complex with D-phenylalanine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-09-26 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.97948 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 203.989, 203.989, 66.904 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.000 - 2.500 |
R-factor | 0.1566 |
Rwork | 0.156 |
R-free | 0.17360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nv8 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.105 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.27) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.7.0029) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.000 | 49.000 | 2.570 |
High resolution limit [Å] | 2.500 | 10.610 | 2.500 |
Rmerge | 0.190 | 0.050 | 0.850 |
Rpim | 0.059 | 0.017 | 0.262 |
Total number of observations | 620384 | 7646 | 51918 |
Number of reflections | 55365 | ||
<I/σ(I)> | 12 | 28.8 | 3 |
Completeness [%] | 100.0 | 99 | 100 |
Redundancy | 11.2 | 9.8 | 11.5 |
CC(1/2) | 0.993 | 0.999 | 0.770 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 298 | 0.1 M TRIS-HCl, pH 7.5, 1.5M ammonium sulfate, 12% v/v glycerol. Crystals were soaked in the same solution with an additional 10% v/v glycerol and 2.5 mM D-phenylalanine |