5DEL
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM59
Replaces: 4RYHExperimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-10-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.979 |
Spacegroup name | P 64 |
Unit cell lengths | 85.046, 85.046, 137.704 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.955 - 2.200 |
R-factor | 0.1958 |
Rwork | 0.195 |
R-free | 0.21460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3i65 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.763 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASES |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.020 | 2.240 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 1.000 | |
Number of reflections | 24803 | |
<I/σ(I)> | 30.28 | 1.1 |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.3 | 6.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.35 | 293 | 0.16 M Ammonium sulfate, 0.1 M NaAcetate, pH 5.35, 13.5% PEG4000, 24% Glycerol, 10 mM DTT |