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5CQD

Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyCCD
Collection date2014-06-21
DetectorADSC QUANTUM 315
Wavelength(s)0.979
Spacegroup nameP 1 21 1
Unit cell lengths53.440, 50.840, 70.150
Unit cell angles90.00, 100.83, 90.00
Refinement procedure
Resolution46.140 - 2.080
R-factor0.1897
Rwork0.188
R-free0.22680
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3v4k
RMSD bond length0.005
RMSD bond angle0.566
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((dev_2166: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]52.8002.160
High resolution limit [Å]2.0802.080
Rmerge0.446
Number of reflections18464
<I/σ(I)>12.4
Completeness [%]86.0
Redundancy2.4
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293PEG3350, MES-NaOH

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