5BQE
Crystal structure of Norrin in complex with the cysteine-rich domain of Frizzled 4 -Methylated form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-09-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97949 |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 98.920, 98.920, 120.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.460 - 2.300 |
R-factor | 0.1978 |
Rwork | 0.197 |
R-free | 0.22110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bpb 5bpu |
RMSD bond length | 0.004 |
RMSD bond angle | 0.927 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER (2.5.2) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.460 | 49.460 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.103 | 0.034 | 1.212 |
Rpim | 0.045 | 0.016 | 0.561 |
Total number of observations | 161410 | 2773 | 14037 |
Number of reflections | 26816 | ||
<I/σ(I)> | 10.7 | 30.6 | 1.4 |
Completeness [%] | 98.9 | 98.5 | 97.2 |
Redundancy | 6 | 5.1 | 5.6 |
CC(1/2) | 0.998 | 0.999 | 0.288 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 0.1 M Bicine, pH 9.0, 10% PEG6000 |