5BQB
Crystal structure of Norrin, a Wnt signalling activator, Crystal Form III
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9796 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 86.761, 38.095, 177.197 |
Unit cell angles | 90.00, 93.97, 90.00 |
Refinement procedure
Resolution | 44.190 - 2.300 |
R-factor | 0.2228 |
Rwork | 0.221 |
R-free | 0.25060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5bpu |
RMSD bond length | 0.004 |
RMSD bond angle | 0.915 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.17) |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 44.190 | 44.190 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.063 | 0.031 | 0.800 |
Rpim | 0.028 | 0.015 | 0.360 |
Total number of observations | 151301 | 2522 | 15315 |
Number of reflections | 26073 | ||
<I/σ(I)> | 16.7 | 52.4 | 2 |
Completeness [%] | 99.2 | 98 | 97.7 |
Redundancy | 5.8 | 5.1 | 6 |
CC(1/2) | 0.999 | 0.998 | 0.721 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 0.1M citrate, pH 5.0, 30% PEG6000 |