5W0U
Crystal structure of MBP fused activation-induced cytidine deaminase (AID) in complex with dCMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-04-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9791 |
Spacegroup name | P 1 2 1 |
Unit cell lengths | 125.005, 39.777, 153.935 |
Unit cell angles | 90.00, 90.14, 90.00 |
Refinement procedure
Resolution | 153.935 - 2.900 |
R-factor | 0.2521 |
Rwork | 0.251 |
R-free | 0.28140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5w0r |
RMSD bond length | 0.006 |
RMSD bond angle | 0.739 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 153.935 | 3.070 |
High resolution limit [Å] | 2.900 | 2.940 |
Rmerge | 0.094 | 0.656 |
Rpim | 0.313 | |
Number of reflections | 36653 | 3868 |
<I/σ(I)> | 12.1 | 2.8 |
Completeness [%] | 98.3 | 99.7 |
Redundancy | 9.8 | 10.2 |
CC(1/2) | 0.974 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 289 | 0.1 M MES at pH 6.2, 3%PEG3350, 10 mM CaCl2, 20mM dCMP |