5DFZ
Structure of Vps34 complex II from S. cerevisiae.
Experimental procedure
| Experimental method | MAD |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE ID29 |
| Synchrotron site | ESRF |
| Beamline | ID29 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2014-12-08 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.939270, 1.254380, 1.254860 |
| Spacegroup name | P 21 21 2 |
| Unit cell lengths | 215.180, 226.840, 127.210 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 50.358 - 4.400 |
| R-factor | 0.3687 |
| Rwork | 0.368 |
| R-free | 0.37620 |
| Structure solution method | MAD |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.703 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | SHARP |
| Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 49.900 | 4.580 |
| High resolution limit [Å] | 4.400 | 4.400 |
| Rmerge | 4.820 | |
| Number of reflections | 40224 | |
| <I/σ(I)> | 21 | 1 |
| Completeness [%] | 99.8 | 98.8 |
| Redundancy | 32.2 | 15.8 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 5.1 | 290 | 300 mM sodium acetate pH 5.1, 3% 1,5- Diaminopentanedihydrochloride. grown at 290 K for 5 days |






