Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5DFZ

Structure of Vps34 complex II from S. cerevisiae.

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID29
Synchrotron siteESRF
BeamlineID29
Temperature [K]100
Detector technologyPIXEL
Collection date2014-12-08
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.939270, 1.254380, 1.254860
Spacegroup nameP 21 21 2
Unit cell lengths215.180, 226.840, 127.210
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.358 - 4.400
R-factor0.3687
Rwork0.368
R-free0.37620
Structure solution methodMAD
RMSD bond length0.002
RMSD bond angle0.703
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHARP
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]49.9004.580
High resolution limit [Å]4.4004.400
Rmerge4.820
Number of reflections40224
<I/σ(I)>211
Completeness [%]99.898.8
Redundancy32.215.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.1290300 mM sodium acetate pH 5.1, 3% 1,5- Diaminopentanedihydrochloride. grown at 290 K for 5 days

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon