5CQD
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 24-ID-E |
| Synchrotron site | APS |
| Beamline | 24-ID-E |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2014-06-21 |
| Detector | ADSC QUANTUM 315 |
| Wavelength(s) | 0.979 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 53.440, 50.840, 70.150 |
| Unit cell angles | 90.00, 100.83, 90.00 |
Refinement procedure
| Resolution | 46.140 - 2.080 |
| R-factor | 0.1897 |
| Rwork | 0.188 |
| R-free | 0.22680 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3v4k |
| RMSD bond length | 0.005 |
| RMSD bond angle | 0.566 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER |
| Refinement software | PHENIX ((dev_2166: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 52.800 | 2.160 |
| High resolution limit [Å] | 2.080 | 2.080 |
| Rmerge | 0.446 | |
| Number of reflections | 18464 | |
| <I/σ(I)> | 12.4 | |
| Completeness [%] | 86.0 | |
| Redundancy | 2.4 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293 | PEG3350, MES-NaOH |






