4YCV
Crystal structure of cladosporin in complex with plasmodium lysyl-tRNA synthetase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL7-1 |
Synchrotron site | SSRL |
Beamline | BL7-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2014-07-02 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.28357 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.632, 112.098, 170.795 |
Unit cell angles | 90.00, 99.30, 90.00 |
Refinement procedure
Resolution | 49.900 - 3.406 |
R-factor | 0.2315 |
Rwork | 0.230 |
R-free | 0.25710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4pg3 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.246 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | MOLREP |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 3.520 |
High resolution limit [Å] | 3.400 | 7.320 | 3.400 |
Rmerge | 0.198 | 0.054 | 0.538 |
Rmeas | 0.229 | 0.062 | 0.624 |
Rpim | 0.114 | 0.030 | 0.312 |
Total number of observations | 134325 | ||
Number of reflections | 34869 | ||
<I/σ(I)> | 4.5 | ||
Completeness [%] | 96.5 | 99.7 | 94.5 |
Redundancy | 3.9 | 4.1 | 3.7 |
CC(1/2) | 0.997 | 0.763 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | tri-sodium citrate, PEG 3350 |