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4Q5V

Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and aphidicolin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
DetectorDECTRIS PILATUS 6M-F
Spacegroup nameP 21 21 21
Unit cell lengths105.051, 116.432, 233.026
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution78.020 - 2.520
R-factor0.233
Rwork0.233
R-free0.26800
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.009
RMSD bond angle1.400
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwareCNS
Refinement softwareCNS
Data quality characteristics
 Overall
Low resolution limit [Å]100.000
High resolution limit [Å]2.500
Rmerge0.042
Number of reflections94074
Completeness [%]97.3
Redundancy5
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5295100 mM KCl, 12.5 mM MgCl2, 25 mM Na-Cacodylate, pH 6.5, 6 % 2-propanol, 2 mM TCEP, VAPOR DIFFUSION, SITTING DROP, temperature 295 K

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PDB entries from 2024-08-07

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