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4LZ7

Crystal structures of GLuR2 ligand-binding-domain in complex with glutamate and positive allosteric modulators

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyIMAGE PLATE
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54
Spacegroup nameP 21 21 2
Unit cell lengths114.380, 164.344, 47.402
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution30.000 - 2.100
R-factor0.1978
Rwork0.196
R-free0.23960
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1lbc
RMSD bond length0.018
RMSD bond angle1.647
Data reduction softwareDENZO
Data scaling softwareSCALEPACK
Phasing softwareAMoRE
Refinement softwareREFMAC
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]30.00030.0002.180
High resolution limit [Å]2.1004.5202.100
Rmerge0.1420.0550.719
Number of reflections53393
<I/σ(I)>6.3
Completeness [%]100.099.7100
Redundancy7.26.97.1
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2771 uL 7 mg/mL protein in 10 mM (S)-Glu, 10 mM HEPES, pH 7.5, 20 mM sodium chloride, 1 mM EDTA, 150 uM ligand (from 30 mM DMSO stock) + 1 uL reservoir (10% PEG8000, 0.1 M zinc acetate, 0.1 M sodium acetate, pH 5.5), crystals appeared in 3-5 days, VAPOR DIFFUSION, HANGING DROP, temperature 277K

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PDB entries from 2024-10-09

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