4EBD
Conformationally Restrained North-methanocarba-2'-deoxyadenosine Corrects the Error-Prone Nature of Human DNA Polymerase Iota
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 110 |
Detector technology | CCD |
Collection date | 2011-12-09 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 97.776, 97.776, 202.739 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.888 - 2.571 |
R-factor | 0.212 |
Rwork | 0.206 |
R-free | 0.26290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3gv5 |
RMSD bond length | 0.017 |
RMSD bond angle | 1.370 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | PHENIX ((phenix.refine: 1.7.3_928)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 84.676 | 2.640 |
High resolution limit [Å] | 2.570 | 2.570 |
Rmerge | 0.027 | 0.409 |
Number of reflections | 18978 | |
<I/σ(I)> | 51.5 | 5.3 |
Completeness [%] | 96.9 | 92.3 |
Redundancy | 6.4 | 5.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.9 | 277 | 20 mM Tris-HCl, pH 7.9, 5% glycerol, 10 mM 2-mercaptoethanol, 150 mM calcium chloride, 12% PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 277K |