3UPC
A general strategy for the generation of human antibody variable domains with increased aggregation resistance
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2011-09-11 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.95369 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 82.610, 143.120, 145.610 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 145.610 - 2.800 |
R-factor | 0.2112 |
Rwork | 0.209 |
R-free | 0.24700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3QOS |
RMSD bond length | 0.011 |
RMSD bond angle | 1.452 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER (2.3.0) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 145.610 | 43.418 | 2.950 |
High resolution limit [Å] | 2.800 | 8.850 | 2.800 |
Rmerge | 0.034 | 0.777 | |
Rmeas | 0.037 | 0.836 | |
Rpim | 0.014 | 0.306 | |
Total number of observations | 10147 | 46056 | |
Number of reflections | 43312 | ||
<I/σ(I)> | 10.5 | 21.7 | 2.7 |
Completeness [%] | 100.0 | 99.2 | 100 |
Redundancy | 7.2 | 6.7 | 7.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | counter diffusion in Crystal Harp capillary | 5.5 | 293 | 20% PEG 3350, 100mM Citrate, pH 5.5, counter diffusion in Crystal Harp capillary, temperature 293K |