3P8E
Crystal structure of human DIMETHYLARGININE DIMETHYLAMINOHYDROLASE-1 (DDAH-1) covalently bound with N5-(1-iminopentyl)-L-ornithine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2009-05-11 |
Detector | RIGAKU RAXIS HTC |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 47.210, 80.900, 74.090 |
Unit cell angles | 90.00, 90.13, 90.00 |
Refinement procedure
Resolution | 35.752 - 2.495 |
R-factor | 0.2168 |
Rwork | 0.212 |
R-free | 0.30830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3i2e |
RMSD bond length | 0.008 |
RMSD bond angle | 1.195 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX ((phenix.refine)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 73.794 | 2.590 |
High resolution limit [Å] | 2.495 | 2.495 |
Rmerge | 0.140 | 0.575 |
Number of reflections | 18983 | |
<I/σ(I)> | 5.9 | 1.97 |
Completeness [%] | 97.4 | 99.8 |
Redundancy | 3.4 | 3.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.2 | 277 | 20% polyethyleneglycol 6000, 0.1 M Tris-HCl, pH 8.2, VAPOR DIFFUSION, SITTING DROP, temperature 277K |